Installation

PyUoI is available for Python 3 on PyPI:

$ pip install pyuoi

and through conda-forge:

$ conda install pyuoi -c conda-forge

pip and conda will install the required dependencies.

Requirements

Runtime

PyUoI requires

numpy>=1.14

h5py>=2.8

scikit-learn>=0.24

and optionally

pycasso

mpi4py

to run.

Develop

To develop PyUoI you will additionally need

cython

to build from source and

pytest

flake8

to run the tests and check formatting.

Docs

To build the docs you will additionally need

sphinx

sphinx_rtd_theme

Install from source

The latest development version of the code can be installed from https://github.com/BouchardLab/PyUoI

# use ssh
$ git clone git@github.com:BouchardLab/pyuoi.git
# or use https
$ git clone https://github.com/BouchardLab/pyuoi.git
$ cd pyuoi
$ pip install -e .[dev]